This package contains Java classes for the analysis of residue coevolution in proteins.

See:
          Description

Packages
org.gersteinlab.coevolution.core.config Contains classes for configurating the programs.
org.gersteinlab.coevolution.core.data Contains classes for configurating handling data.
org.gersteinlab.coevolution.core.io Contains classes for IO operations.
org.gersteinlab.coevolution.core.stat Contains classes for coevolution score computations.
org.gersteinlab.coevolution.core.tasks Contains classes that define the main tasks of a coevolution study.
org.gersteinlab.coevolution.core.util Contains supporting utility classes.
org.gersteinlab.coevolution.inter Contains classes for performing inter-protein analysis.
org.gersteinlab.coevolution.intra Contains classes for performing intra-protein analysis.
org.gersteinlab.coevolution.web Contains classes for performing analysis through the web interface.

 

This package contains Java classes for the analysis of residue coevolution in proteins. It provides methods for downloading and preprocessing data, computing coevolution scores, and plotting and analyzing results.

There are three ways to use the classes:

This API documentation is mainly for the third group of users, who need to understand how the API is defined and what the classes actually do.